Genomic Standards Consortium Publications

The current GSC publication list:

The MIGS manuscript: The Nature Biotech community consultation concluded April 19th, 2007. Decision by NBT pending.

Nature Biotech

GSC Meeting Reports

  • Dawn Field, George Garrity, Tanya Gray, Jeremy Selengut, Peter Sterk, Nick Thomson, Tatiana Tatusova, Guy Cochrane, Frank Oliver Glockner, Renzo Kottmann, Allyson L. Lister, Yoshio Tateno, and Robert Vaughan. (2007) Meeting Report: eGenomics: Cataloguing Our Complete Genome Collection III. Comparative and Functional Genomics: A journal of integrative biology (2006) June, Vol. 10, No. 2: 100 -104.

PDF – Uncorrected proof Journal PubMed

  • Field D, Morrison N, Selengut J, Sterk P. Meeting Report: eGenomics: Cataloguing Our Complete Genome Collection II. OMICS: A journal of integrative biology (2006) June, Vol. 10, No. 2: 100 -104.

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  • Field D, Garrity G, Morrison N, Selengut J, Sterk P, Thomson N, Tatusova T. Meeting Report: eGenomics: Cataloguing our Complete Genome Collection. Comparative and Functional Genomics (2006) 6: 363-368.

PDF Journal

 

Special Issue of OMICS

Papers from the special issue of OMICS (http://www.liebertonline.com/toc/omi/10/2) on data standards that emerged from the 2nd and 1st GSC workshops:

  • Field D, Sansone S-A. A special issue on Omic data standards. OMICS: A journal of integrative biology (2006) June, Vol. 10, No. 2: 84 -93

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  • Morrison N, Cochrane G, Faruque N, Tatusova T, Tateno Y, Hancock D, and Field D. The concept of Sample in Omics Technology. OMICS: A journal of integrative biology (2006) June, Vol. 10, No. 2: 127 -137 .

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OMICS Journal

Related papers: standardization of genomic databases

  • Jeffrey L. Boore. Requirements and Standards for Organelle Genome Databases. OMICS: A Journal of Integrative Biology (2006) June, Vol. 10, No. 2 : 119 -126.

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  • Guy Cochrane, Kirsty Bates, Rolf Apweiler, Yoshio Tateno, Jun Mashima, Takehide Kosuge, Ilene Karsch Mizrachi, Susan Schafer, Michael Fetchko. Evidence Standards in Experimental and Inferential INSDC Third Party Annotation Data. OMICS: A Journal of Integrative Biology (2006) June, 2006, Vol. 10, No. 2: 105-113.

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  • Peter Sterk, Paul J. Kersey, Rolf Apweiler. Genome Reviews: Standardizing Content and Representation of Information about Complete Genomes OMICS: A Journal of Integrative Biology (2006) June, 2006, Vol. 10, No. 2: 114-118.

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Development of Ontologies relevant to the description of genomes and metagenomes

  • Whetzel P.L, Brinkman R.R, Causton H.C, Fan L, Field D, Fostel J, Fragaso G, Gray T, Heiskanen M, Hernandez-Boussard T, Morrison N, Parkinson H, Rocca-Serra P, Sansone S-A, Schober D, Smith B, Stevens R, Stoeckert Jnr C.J, Taylor C, White J, Wood A, and the FuGO Working Group. Development of FuGO: An Ontology for Functional Genomics Investigations. OMICS: A journal of integrative biology (2006) June, Vol. 10, No. 2: 199 -204.

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Initial Proposal for MIGS

  • Field D, & Hughes J. Cataloguing our current genome collection. Microbiology (2005) 151, 1016-1019.

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  • The review paper that led to the above call for MIGS: Martiny, J.B.H. and D. Field. Ecological perspectives on the sequenced genome collection. (2005) Ecology Letters 8: 1334-1345.

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See the GSC wiki for the latest publications list: http://darwin.nerc-oxford.ac.uk/gc_wiki/index.php/GSC_Publications

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